DNA-Seq of Pyrus: tender leaf - SRA

SRX5740578: DNA-Seq of Pyrus: tender leaf
1 PACBIO_SMRT (Sequel) run: 526,874 spots, 5.1G bases, 1.2Gb downloads

Design: The genomic DNA was extracted from tender leaves and sheared to about 20 kb. The 20 kb SMRTbel libraries were constructed and sequenced on a PacBio Sequel sequencer.

Submitted by: Research Institute of Pomology, Chinese Academy of Agricultural Sciences

Study: Pyrus betulifolia Genome sequencing and assembly

PRJNA529328 • SRP193928 • All experiments • All runs

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China is the origin and evolution centre of Oriental pears. Pyrus betulaefolia is a wild species native to China, distributed in its northern region and widely used as rootstock. Here, we report the de novo assembly of the genome for P. betulaefolia 'Shanxi Duli 1' using an integrated strategy combining PacBio sequencing, BioNano mapping, and Hi-C mapping. The genome assembly size is 532.7 Mb, with a contig N50 of 1.57 Mb. A total of 59,552 protein-coding genes and 247.4 Mb of repetitive sequences were annotated for this genome.

Sample: Plant sample from Pyrus betulaefolia

SAMN11264821 • SRS4676114 • All experiments • All runs

Organism: Pyrus betulifolia

Library:

Name: Pacbio 2

Instrument: Sequel

Strategy: WGA

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Runs: 1 run, 526,874 spots, 5.1G bases, 1.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR8961016	526,874	5.1G	1.2Gb	2020-05-24

ID:: 7728665

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